This list of sequenced eubacterial genomes contains most of the eubacteria known to have publicly available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database which can be searched on the web. A few of the listed genomes may not be in the INSDC database, but in other public databases. Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature. For the genomes of archaea see list of sequenced archaeal genomes.

Abditibacteriota

Actinomycetota

Aquificota

Armatimonadota

Bacteroidota/Chlorobiota group

Caldisericota

Chlamydiota/Verrucomicrobiota group

Chloroflexota

Chrysiogenota

Cyanobacteria

Deferribacterota

Deinococcota

Dictyoglomota

Elusimicrobiota

Fibrobacterota/Acidobacteriota group

Bacillota

Fusobacteriota

Gemmatimonadota

Nitrospirota

Planctomycetota

Pseudomonadota

Alphaproteobacteria

Betaproteobacteria

Gammaproteobacteria

Zetaproteobacteria

Myxococcota–Campylobacterota

Spirochaetota

Synergistota

Mycoplasmatota

Thermodesulfobacteriota

Thermotogota